Examples

• 10x Genomics I/O
  • Download data
  • Reading chromatin accessibility data from 10x Genomics files
• ArchR I/O
  • ArchR: Creating Arrow Files
  • Reading matrices from Arrow files
• Ranges
  • Prepare data
  • Filter by genomic ranges
  • Overlap threshold
• chromVAR
  • Prepare a demo object
  • Run chromVAR
• Utility functions for sequences
  • One-hot encoding