Postdoctoral scolar at Stanford
w/ Anshul Kundaje & Jesse Engreitz

Previously

Sanger Visiting scientist
DKFZ Visiting researcher
EMBL Predoctoral fellow w/ Oliver Stegle
IITP Research trainee w/ Mikhail Gelfand

Alumnus

YSDA Data science
EMBL Computational genomics (PhD)
MSU Bioengineering and bioinformatics

Projects

scverse Open-source consortium
muon Multimodal omics framework
MOFA Multi-omics factor analysis

New repositories

shadows Low-memory scverse data access
pqdata Parquet-based scverse data serialization
github: @gtca

Selected publications

2023 The scverse project
The scverse project provides a computational ecosystem for single-cell omics data analysis
2021 Multimodal omics analysis framework
MUON: multimodal omics analysis framework
2020 Multimodal single-cell data integration framework
MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data
CRISPRa screen for zygotic genome activation
A Single-Cell Transcriptomics CRISPR-Activation Screen Identifies Epigenetic Regulators of the Zygotic Genome Activation Program
orcid: *6983 scholar: a3d4*

Contact

drop me an
let's meet in san francisco or palo alto
𝕏: @gtcaa